José Luis Ávila-Jiménez

Prof. Dr. José Luis Ávila-Jiménez

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
9 December 2023 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
José Luis Ávila-JiménezJosé Luis Ávila-Jiménez
José Luis Ávila-Jiménez
VCVanesa Cantón-Habas
Vanesa Cantón-Habas
MGMaria del Pilar Carrera- González
Maria del Pilar Carrera- González
MRManuel Rich-Ruiz
Manuel Rich-Ruiz
Sebastián VenturaSebastián Ventura
Sebastián Ventura

24 June 2020 in Microorganisms
Verified
Journal Article
Open access
PDF file
MAMaria-Luisa Avila-Jimenez
Maria-Luisa Avila-Jimenez
GBGavin Burns
Gavin Burns
Zhili HeZhili He
Zhili He
JZJizhong Zhou
Jizhong Zhou
AHAndrew Hodson
Andrew Hodson
DPDavid Pearce
David Pearce
Microbial communities have inherently high levels of metabolic flexibility and functional redundancy, yet the structure of microbial communities can change rapidly with environmental perturbation. To understand whether such changes observed at the taxonomic level translate into differences at the functional level, we analyzed the structure of taxonomic and functional gene distribution across Arctic and Antarctic locations. Taxonomic diversity (in terms of alpha diversity and species richness) differed significantly with location. However, we found that functional genes distributed evenly across bacterial networks and that this functional distribution was also even across different geographic locations. For example, on average 15% of the functional genes were related to carbon cycling across all bacterial networks, slightly over 21% of the genes were stress-related and only 0.5% of the genes were linked to carbon degradation functions. In such a distribution, each bacterial network includes all of the functional groups distributed following the same proportions. However, the total number of functional genes that is included in each bacterial network differs, with some clusters including many more genes than others. We found that the proportion of times a specific gene must occur to be linked to a specific cluster is 8%, meaning the relationship between the total number of genes in the cluster and the number of genes per function follows a linear pattern: smaller clusters require a gene to appear less frequently to get fixed within the cluster, while larger clusters require higher gene frequencies. We suggest that this mechanism of functional association between equally rare or equally abundant genes could have implications for ecological resilience, as non-dominant genes also associate in fully functioning ecological networks, potentially suggesting that there are always pre-existing functional networks available to exploit new ecological niches (where they can become dominant) as they emerge; for example, in the case of rapid or sudden environmental change. Furthermore, this pattern did not correlate with taxonomic distribution, suggesting that bacteria associate based on functionality and this is independent of its taxonomic position. Our analyses based on ecological networks also showed no clear evidence of recent environmental impact on polar marine microbial communities at the functional level, unless all communities analyzed have changed exactly in the same direction and intensity, which is unlikely given we are comparing areas changing at different rates.

1 October 2025
Verified
Book Chapter
Closed access
PDF file
ABAnn-Sophie Bülter
Ann-Sophie Bülter
LHLudwig Horsthemke
Ludwig Horsthemke
José Luis Ávila-JiménezJosé Luis Ávila-Jiménez
José Luis Ávila-Jiménez
FHFrederik Hoffmann
Frederik Hoffmann
FRFrancisco J. Rodriguez-Lozano
Francisco J. Rodriguez-Lozano
Peter GlösekötterPeter Glösekötter
Peter Glösekötter

10 November 2025 in IEEE Sensors Journal
Verified
Journal Article
Open access
José Luis Ávila-JiménezJosé Luis Ávila-Jiménez
José Luis Ávila-Jiménez
ABAnn-Sophie Bülter
Ann-Sophie Bülter
LHLudwig Horsthemke
Ludwig Horsthemke
FRFrancisco J. Rodriguez-Lozano
Francisco J. Rodriguez-Lozano
MOManuel Ortiz-López
Manuel Ortiz-López
Peter GlösekötterPeter Glösekötter
Peter Glösekötter
Negatively charged nitrogen–vacancy (NV) centers in diamond are promising platforms for magnetic field sensing under ambient conditions, yet practical deployment is often limited by hardware complexity, power consumption, and computational cost. All-optical approaches based on fluorescence lifetime measurements avoid microwave excitation and enable simpler, potentially more scalable sensor designs, but the nonlinear response to magnetic and thermal fields requires advanced modeling. In this study, a systematic comparison of 18 regression algorithms—including linear models, ensemble methods, support vector machines, and symbolic regression—was conducted for predicting magnetic field strength from NV fluorescence lifetime data. A dataset of 22 758 measurements was employed, and models were assessed in terms of both predictive accuracy and computational footprint (training time, model complexity, and inference latency). The results indicate that ensemble techniques such as LightGBM and XGBoost achieve near-perfect accuracy while maintaining subsecond inference times, making them suitable for real-time embedded deployment. In contrast, symbolic regression provides negligible inference cost but suffers from significantly lower accuracy. These findings offer quantitative guidance for the selection of machine learning models that balance precision and efficiency, paving the way toward compact, low-power, all-optical NV magnetometers for resource-constrained platforms.

20 January 2026 in Journal of Clinical Medicine
Verified
Journal Article
Open access
PDF file
NLNuria Luque-Reigal
Nuria Luque-Reigal
VCVanesa Cantón-Habas
Vanesa Cantón-Habas
MRManuel Rich-Ruiz
Manuel Rich-Ruiz
GSGinés Sabater-García
Ginés Sabater-García
ÁCÁlvaro Cosculluela-Fernández
Álvaro Cosculluela-Fernández
José Luis Ávila-JiménezJosé Luis Ávila-Jiménez
José Luis Ávila-Jiménez
Background/Objectives: Acute health events in institutionalized older adults often lead to avoidable hospital referrals, requiring rapid, accurate remote decision-making. Telemedicine has become a key tool to improve assessment and care continuity in nursing homes. This study aimed to evaluate outcomes associated with telemedicine-supported management of acute events in residential care facilities for older adults and to develop a deep learning model to classify episodes and predict hospital referrals. Methods: A quasi-experimental study analyzed 5202 acute events managed via a 24/7 telemedicine system in Vitalia nursing homes (January–October 2024). The dataset included demographics, comorbidities, vital signs, event characteristics, and outcomes. Data preprocessing involved imputation, normalization, encoding, and dimensionality reduction via Truncated SVD (200 components). Given the imbalance in referral outcomes (~10%), several resampling techniques (SMOTE, SMOTEENN, SMOTETomek) were applied. A deep feedforward neural network (256–128–64 units with Batch Normalization, LeakyReLU, Dropout, AdamW) was trained using stratified splits (70/10/20) and optimized via cross-validation. Results: Telemedicine enabled the resolution of approximately 90% of acute events within the residential setting, reducing reliance on emergency services. The deep learning model outperformed traditional algorithms, achieving its best performance with SMOTEENN preprocessing (AUC = 0.91, accuracy = 0.88). The proposed model achieved higher overall performance than baseline classifiers, providing a more balanced precision–specificity trade-off for hospital referral prediction, with an F1-score of 0.63. Conclusions: Telemedicine-enabled acute care, strengthened by a robust deep learning classifier, offers a reliable strategy to enhance triage accuracy, reduce unnecessary transfers, and optimize clinical decision-making in nursing homes. These findings support the integration of AI-assisted telemedicine systems into long-term care workflows.

1 October 2025
Verified
Book Chapter
Closed access
PDF file
GAGhaidaa Ahmed Ali
Ghaidaa Ahmed Ali
José Luis Ávila-JiménezJosé Luis Ávila-Jiménez
José Luis Ávila-Jiménez
MAMohammed Altwijri
Mohammed Altwijri
Sebastián VenturaSebastián Ventura
Sebastián Ventura