Sergei A. Subbotin

Dr. Sergei A. Subbotin

Plant Pest Diagnostic Center, California Department of Food and Agriculture, 3294 Meadowview Road, Sacramento, CA 95832, USA
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Research Focus & Metrics

Academic Career Length

44Years (1983-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2017 in Plant Disease
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Journal Article
Open access
RSRichard Smiley
Richard Smiley
ADAbdelfattah A. DABABAT
Abdelfattah A. DABABAT
SISadia Iqbal
Sadia Iqbal
MJMichael Jones
Michael Jones
ZMZahra Tanha Maafi
Zahra Tanha Maafi
LWLieven Waeyenberge
Lieven Waeyenberge
Small grain cereals have served as the basis for staple foods, beverages, and animal feed for thousands of years. Wheat, barley, oats, rye, triticale, rice, and others are rich in calories, proteins, carbohydrates, vitamins, and minerals. These cereals supply 20% of the calories consumed by people worldwide and are therefore a primary source of energy for humans and play a vital role in global food and nutrition security. Global production of small grains increased linearly from 1960 to 2005, and then began to decline. Further decline in production is projected to continue through 2050 while global demand for these grains is projected to increase by 1% per annum. Currently, wheat, barley, and oat production exceeds consumption in developed countries, while in developing countries the consumption rate is higher than production. An increasing demand for meat and livestock products is likely to compound the demand for cereals in developing countries. Current production levels and trends will not be sufficient to fulfill the projected global demand generated by increased populations. For wheat, global production will need to be increased by 60% to fulfill the estimated demand in 2050. Until recently, global wheat production increased mostly in response to development of improved cultivars and farming practices and technologies. Production is now limited by biotic and abiotic constraints, including diseases, nematodes, insect pests, weeds, and climate. Among these constraints, plant-parasitic nematodes alone are estimated to reduce production of all world crops by 10%. Cereal cyst nematodes (CCNs) are among the most important nematode pests that limit production of small grain cereals. Heavily invaded young plants are stunted and their lower leaves are often chlorotic, forming pale green patches in the field. Mature plants are also stunted, have a reduced number of tillers, and the roots are shallow and have a “bushy-knotted” appearance. CCNs comprise a number of closely-related species and are found in most regions where cereals are produced.

13 March 2019 in IEEE Transactions on Industrial Informatics
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Journal Article
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JRJan Rabcan
Jan Rabcan
VLVitaly Levashenko
Vitaly Levashenko
Elena ZaitsevaElena Zaitseva
Elena Zaitseva
MKMiroslav Kvassay
Miroslav Kvassay
Sergei A. SubbotinSergei A. Subbotin
Sergei A. Subbotin
A typical algorithm for signal classification consists of two steps: signal preliminary transformation and classification itself. The procedures of preliminary transformation are used to extract specific features of the initial signal and reduce its dimension for effective classification. The result of this transformation is information loss of initial signal, which implies uncertainty of data used in classification. This uncertainty can be taken into account by the application of fuzzy classifiers. In this paper, a new algorithm with application of fuzzy classifier is proposed for signal classification. A new procedure of fuzzification is added into the preliminary transformation and Fuzzy Decision Tree is used for classification. The efficiency of this algorithm is examined based on the problem of detection of defective blades of an aircraft engine gas turbine. The experiments showed that the accuracy of the classification for the considered example is 0.989. This is the best result in comparison with other classification methods used to solve this problem.

1 October 2019 in Engineering Structures
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Journal Article
Closed access
JRJan Rabcan
Jan Rabcan
VLVitaly Levashenko
Vitaly Levashenko
Elena ZaitsevaElena Zaitseva
Elena Zaitseva
MKMiroslav Kvassay
Miroslav Kvassay
Sergei A. SubbotinSergei A. Subbotin
Sergei A. Subbotin

22 February 2021 in Plants
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Journal Article
Open access
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PSPhougeishangbam Rolish Singh
Phougeishangbam Rolish Singh
GKGerrit Karssen
Gerrit Karssen
MCMarjolein Couvreur
Marjolein Couvreur
Sergei A. SubbotinSergei A. Subbotin
Sergei A. Subbotin
WBWim Bert
Wim Bert
Pin nematodes of the genus Paratylenchus are obligate ectoparasites of a wide variety of plants that are distributed worldwide. In this study, individual morphologically vouchered nematode specimens of fourteen Paratylenchus species, including P. aculentus, P. elachistus, P. goodeyi, P. holdemani, P. idalimus, P. microdorus, P. nanus, P. neoamblycephalus, P. straeleni and P. veruculatus, are unequivocally linked to the D2-D3 of 28S, ITS, 18S rRNA and COI gene sequences. Combined with scanning electron microscopy and a molecular analysis of an additional nine known and thirteen unknown species originating from diverse geographic regions, a total of 92 D2-D3 of 28S, 41 ITS, 57 18S rRNA and 111 COI new gene sequences are presented. Paratylenchus elachistus, P. holdemani and P. neoamblycephalus are recorded for the first time in Belgium and P. idalimus for the first time in Europe. Paratylenchus is an excellent example of an incredibly diverse yet morphologically minimalistic plant-parasitic genus, and this study provides an integrated analysis of all available data, including coalescence-based molecular species delimitation, resulting in an updated Paratylenchus phylogeny and the corrective reassignment of 18 D2-D3 of 28S, 3 ITS, 3 18S rRNA and 25 COI gene sequences that were previously unidentified or incorrectly classified.

1 January 2019 in Nematology
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Journal Article
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Sergei A. SubbotinSergei A. Subbotin
Sergei A. Subbotin
Summary: Rapid diagnosis tools for detection of root-knot nematodes play an important role in the disease control and eradication programme. Recombinase polymerase amplification (RPA) assays were developed targeting the IGS rRNA gene of the pacara earpod tree root-knot nematode, Meloidogyne enterolobii. The RPA assays using TwistAmp® Basic and TwistAmp® exo kits allowed detection of M. enterolobii from gall tissues and crude nematode extracts of all stages of target species without a DNA extraction step. The results of real-time RPA assays using a real-time fluorescent detection of a series of crude nematode extracts showed reliable detection with sensitivity of 1/10 of a second-stage juvenile in a RPA reaction tube after 15-20 min. The RPA assay provides affordable, simple, fast and sensitive detection of M. enterolobii.

1 January 2013 in Nematology
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Journal Article
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Sergio Álvarez-OrtegaSergio Álvarez-Ortega
Sergio Álvarez-Ortega
Sergei A. SubbotinSergei A. Subbotin
Sergei A. Subbotin
RPReyes Peña-Santiago
Reyes Peña-Santiago
This contribution presents a study of Iberian and Californian populations of Aporcelaimellus simplex, including morphological, morphometric and molecular data. The species is characterised and distinguished by its lip region offset by an expansion, pars refringens vaginae absent, and conical tail with a small but distinct hyaline terminal portion. No significant difference exists between American and European populations. Molecular data and the derived evolutionary tree show a topology in which this species forms a well-supported group with members of Discolaiminae, far from other representatives of Aporcelaimellus. Putting special emphasis in the absence of pars refringens vaginae, A. simplex is transferred to the genus Aporcella. The taxonomy of this genus is revised in depth, with the proposal of an emended diagnosis, the provision of a list of 13 valid species (mostly new combinations from Aporcelaimellus) as well as a key to their identification and a compendium of their main morphometrics. Aporcella debruinae sp. n. is proposed for Aporcelaimellus papillatus apud de Bruin & Heyns, 1992.