Rodents are important reservoirs for zoonotic vector-borne agents. Thus, the distribution of rodents and their vicinity to humans and companion animals may have an important impact on human and animal health. However, the reservoir potential of some rodent genera, e.g. Microtus, has not yet been precisely examined concerning tick-borne pathogens in Central Europe. Therefore, we examined small mammals from Germany and the Czech Republic for the following vector-borne pathogens: Babesia spp., Bartonella spp., Anaplasma phagocytophilum, “Candidatus Neoehrlichia mikurensis” (CNM) and Coxiella burnetii. Spleen DNA from 321 small mammals belonging to four genera, Myodes (n = 78), Apodemus (n = 56), Microtus (n = 149), Sorex (n = 38), collected during 2014 in Germany and the Czech Republic were available for this study. DNA samples were examined for the presence of Babesia and Bartonella DNA by conventional PCR targeting the 18S rRNA gene and the 16S–23S rRNA intergenic spacer region, respectively. For the detection of CNM, A. phagocytophilum and C. burnetii real-time PCR assays were performed. Bartonella spp. DNA was detected in 216 specimens (67.3%) with 102/174 (58.6%) positive in Germany and 114/147 (77.6%) in the Czech Republic. The prevalence in each genus was 44.9% for Myodes, 63.2% for Sorex, 77.2% for Microtus and 75% for Apodemus. Four Bartonella species, i.e. Bartonella sp. N40, B. grahamii, B. taylorii and B. doshiae, as well as uncultured bartonellae, were detected. The Bartonella species diversity was higher in rodents than in shrews. In total, 27/321 (8.4%) small mammals were positive for CNM and 3/321 (0.9%) for A. phagocytophilum (S. coronatus and M. glareolus). All samples were negative for Babesia spp. and Coxiella spp. While the detected high prevalence for Bartonella in Apodemus and Myodes spp. is confirmatory with previous findings, the prevalence in Microtus spp. was unexpectedly high. This indicates that individuals belonging to this genus may be regarded as potential reservoirs. Interestingly, only Sorex spp. and M. glareolus were positive for A. phagocytophilum in the present study, suggesting a possible importance of the latter for the maintenance of certain A. phagocytophilum strains in nature.

The conversion of forests from complex natural ecosystems to simplified commercial woodlands is one of the major causes of biodiversity loss. To maintain biodiversity, we need to understand how current management practices influence forest ecosystems. We studied the effects of forest successional stage and management intensity on the abundance, species richness, and assemblage composition of small mammals. Our results show that management intensity significantly contributes to reducing the number of species after clearcutting. We revealed that intensively managed clearings can make the dispersal or foraging activity of small mammals difficult and hence negatively influence their abundance and species richness. The significantly higher species richness of small mammal species was recorded within more extensively rather than intensively managed clearings. In contrast, we did not observe significant changes in species richness and abundance after intensive management in old-growth forests. Species Clethrionomys glareolus and Apodemus flavicollis reached the greatest abundance in old-growth forest patches. On the other hand, Microtus arvalis and Microtus subterraneus were species mainly associated with the successionally youngest forest stands. Our analysis suggests that intensive management interventions (i.e., vegetation destruction by pesticides and wood debris removal by soil milling) in clearings produce unhostile environments for majority of the small mammal species.

We examined the changes in the amount of nitrogenous substances in 1497 stomachs of four small forest rodent species [yellow-necked mouse (Apodemus flavicollis), wood mouse (Apodemus sylvaticus), bank vole (Clethrionomys glareolus), and common vole (Microtus arvalis)] using near-infrared reflectance spectroscopy (NIRS). The amount of nitrogenous substances varied from 9.31% to 65.39% of dry matter. Significant differences were observed between species, with both Apodemus species displaying higher variability and higher mean nitrogenous substance content in the diet compared with M. arvalis. Results for C. glareolus were intermediate for both variability and mean value. In general, concentrations of nitrogenous substances were higher in the diet of juveniles. Differences in diet composition (or ratio of nitrogenous substance) in different biotopes were only demonstrated for C. glareolus. Moreover, C. glareolus diet varied within the same biotope over different years. Clethrionomys glareolus was the only species to display differences in diet between males and females, with males having higher nitrogen concentrations. These findings are in agreement with the C. glareolus broad dietary niche. This study confirmed the suitability of NIRS for determining nitrogenous substance content in the diet of small rodent species.

The integrated management of a serious agricultural pest, the common vole (Microtus arvalis), should be based on modern and empirically proven approaches. The aim of this paper was to map the historical development of the monitoring and control practices of the common vole in the Czech Republic (CR) territory. Published records of vole population outbreaks and heavy crop damage have been documented in the Czech literature since the turn of the 20th century, and even in crops planted in highly fragmented and diversified agricultural landscapes. In the CR, systematic state monitoring was introduced in 1955. In the 1930’s, there were more than 100 various rodent preparations against the common vole, which were formulated as smoke generators, gases, baits, dusts, toxic mushy mass, and insecticide sprays. Currently, there are only six preparations with three active ingredients registered in the CR. Zinc phosphide is the only active ingredient that has been used from the 1940s to the present, whereas anticoagulants were banned for vole control in 2011 owing to the high environmental risks. The poisoning of nontarget animals by rodenticides is not a new phenomenon tied to synthetic pesticides; poisoning by botanical extracts (strychnine) was documented more than 100 years ago. This review may provide both historical lessons for current practice and new incentives for future research.