Simon Gubbins

Dr. Simon Gubbins

orcid

Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 July 2007 in Journal of The Royal Society Interface
Verified
Journal Article
Open access
SGSimon Gubbins
Simon Gubbins
SCSimon Carpenter
Simon Carpenter
MBMatthew Baylis
Matthew Baylis
JWJames L.N Wood
James L.N Wood
PMPhilip S Mellor
Philip S Mellor
Since 1998 bluetongue virus (BTV), which causes bluetongue, a non-contagious, insect-borne infectious disease of ruminants, has expanded northwards in Europe in an unprecedented series of incursions, suggesting that there is a risk to the large and valuable British livestock industry. The basic reproduction number,R0, provides a powerful tool with which to assess the level of risk posed by a disease. In this paper, we computeR0for BTV in a population comprising two host species, cattle and sheep. Estimates for each parameter which influencesR0were obtained from the published literature, using those applicable to the UK situation wherever possible. Moreover, explicit temperature dependence was included for those parameters for which it had been quantified. Uncertainty and sensitivity analyses based on Latin hypercube sampling and partial rank correlation coefficients identified temperature, the probability of transmission from host to vector and the vector to host ratio as being most important in determining the magnitude ofR0. The importance of temperature reflects the fact that it influences many processes involved in the transmission of BTV and, in particular, the biting rate, the extrinsic incubation period and the vector mortality rate.

6 May 2011 in Science
Verified
Journal Article
Closed access
BCBryan Charleston
Bryan Charleston
BBBartlomies M. Bankowski
Bartlomies M. Bankowski
SGSimon Gubbins
Simon Gubbins
MCMargo E. Chase-Topping
Margo E. Chase-Topping
DSDavid Schley
David Schley
MWMark E. J. Woolhouse
Mark E. J. Woolhouse
Livestock experiments provide precise parameters for incubation and infectious periods for foot-and-mouth disease virus.

18 November 2011 in PLOS ONE
Verified
Journal Article
Open access
PDF file
SCSimon Carpenter
Simon Carpenter
AWAnthony Wilson
Anthony Wilson
JBJames Barber
James Barber
Eva VeronesiEva Veronesi
Eva Veronesi
PMPhilip Mellor
Philip Mellor
SGSimon Gubbins
Simon Gubbins
The rate at which viruses replicate and disseminate in competent arthropod vectors is limited by the temperature of their environment, and this can be an important determinant of geographical and seasonal limits to their transmission by arthropods in temperate regions. Here, we present a novel statistical methodology for estimating the relationship between temperature and the extrinsic incubation period (EIP) and apply it to both published and novel data on virus replication for three internationally important orbiviruses (African horse sickness virus (AHSV), bluetongue virus (BTV) and epizootic haemorrhagic disease virus (EHDV)) in their Culicoides vectors. Our analyses show that there can be differences in vector competence for different orbiviruses in the same vector species and for the same orbivirus in different vector species. Both the rate of virus replication (approximately 0.017-0.021 per degree-day) and the minimum temperature required for replication (11-13°C), however, were generally consistent for different orbiviruses and across different Culicoides vector species. The estimates obtained in the present study suggest that previous publications have underestimated the replication rate and threshold temperature because the statistical methods they used included an implicit assumption that all negative vectors were infected. Robust estimates of the temperature dependence of arbovirus replication are essential for building accurate models of transmission and for informing policy decisions about seasonal relaxations to movement restrictions. The methodology developed in this study provides the required robustness and is superior to methods used previously. Importantly, the methods are generic and can readily be applied to other arbovirus-vector systems, as long as the assumptions described in the text are valid.

24 June 2015 in Transboundary and Emerging Diseases
Verified
Journal Article
Open access
PDF file
KDK. Davies
K. Davies
LGL. C. Goatley
L. C. Goatley
CGClaire Guinat
Claire Guinat
CNC. L. Netherton
C. L. Netherton
SGSimon Gubbins
Simon Gubbins
ARA. L. Reis
A. L. Reis
African swine fever virus (ASFV) causes a lethal haemorrhagic disease of swine which can be transmitted through direct contact with infected animals and their excretions or indirect contact with contaminated fomites. The shedding of ASFV by infected pigs and the stability of ASFV in the environment will determine the extent of environmental contamination. The recent outbreaks of ASF in Europe make it essential to develop disease transmission models in order to design effective control strategies to prevent further spread of ASF. In this study, we assessed the shedding and stability of ASFV in faeces, urine and oral fluid from pigs infected with the Georgia 2007/1 ASFV isolate. The half-life of infectious ASFV in faeces was found to range from 0.65 days when stored at 4°C to 0.29 days when stored at 37°C, while in urine it was found to range from 2.19 days (4°C) to 0.41 days (37°C). Based on these half-lives and the estimated dose required for infection, faeces and urine would be estimated to remain infectious for 8.48 and 15.33 days at 4°C and 3.71 and 2.88 days at 37°C, respectively. The half-life of ASFV DNA was 8 to 9 days in faeces and 2 to 3 days in oral fluid at all temperatures. In urine, the half-life of ASFV DNA was found to be 32.54 days at 4°C decreasing to 19.48 days at 37°C. These results indicate that ASFV in excretions may be an important route of ASFV transmission.

1 February 2018 in Current Opinion in Virology
Verified
Journal Article
Open access
DPDavid J Paton
David J Paton
SGSimon Gubbins
Simon Gubbins
DKDonald P. King
Donald P. King
Foot-and-mouth disease (FMD) is highly infectious, but despite the large quantities of FMD virus released into the environment and the extreme susceptibility of host species to infection, transmission is not always predictable. Whereas virus spread in endemic settings is characterised by frequent direct and indirect animal contacts, incursions into FMD-free countries may be seeded by low-probability events such as fomite or wind-borne aerosol routes. There remains a void between data generated from small-scale experimental studies and our ability to reliably reconstruct transmission routes at different scales between farms, countries and regions. This review outlines recent transmission studies in susceptible host species, and considers new approaches that integrate virus genomics and epidemiological data to recreate and understand the spread of FMD.

9 July 2008 in Journal of Applied Ecology
Verified
Journal Article
Closed access
PDF file
SCSimon Carpenter
Simon Carpenter
CSCamille Szmaragd
Camille Szmaragd
JBJames Barber
James Barber
KLKarien Labuschagne
Karien Labuschagne
SGSimon Gubbins
Simon Gubbins
PMPhilip Mellor
Philip Mellor