Plants exhibit remarkable abilities to learn, communicate, memorize, and develop stimulus‐dependent decision‐making circuits. Unlike animals, plant memory is uniquely rooted in cellular, molecular, and biochemical networks, lacking specialized organs for these functions. Consequently, plants can effectively learn and respond to diverse challenges, becoming used to recurring signals. Artificial intelligence (AI) and machine learning (ML) represent the new frontiers of biological sciences, offering the potential to predict crop behavior under environmental stresses associated with climate change. Epigenetic mechanisms, serving as the foundational blueprints of plant memory, are crucial in regulating plant adaptation to environmental stimuli. They achieve this adaptation by modulating chromatin structure and accessibility, which contribute to gene expression regulation and allow plants to adapt dynamically to changing environmental conditions. In this review, we describe novel methods and approaches in AI and ML to elucidate how plant memory occurs in response to environmental stimuli and priming mechanisms. Furthermore, we explore innovative strategies exploiting transgenerational memory for plant breeding to develop crops resilient to multiple stresses. In this context, AI and ML can aid in integrating and analyzing epigenetic data of plant stress responses to optimize the training of the parental plants.
25 February 2009 in Clinical Pharmacology & Therapeutics
Acoustic vibrations may induce different changes in plants that perceive them, and plants themselves can also emit acoustic signals. The aim of this review was to cover the past ten years of plant acoustic research and its shortcomings, with a focus on the reflecting, sensing, and emission of ultrasound by plants. Ultrasonication may alter plant growth and development, and an increasing number of studies are being carried out to investigate its effects on both in vitro plant culture and greenhouse or field plant production, as well as on the biochemical and molecular functions of plants. In this paper, we summarized the progress in the use of ultrasound in horticulture and agriculture for enhancing plant growth and development, either in vitro or in vivo, improving yield and crop quality and increasing stress tolerance, as well as for special methodological applications, like sonication-assisted Agrobacterium-mediated transformation. Some research gaps, such as the lack of a precise mechanism for plant ultrasound emission, the possible participation of some reactive radicals in ultrasound signaling, the effect of ultrasound on the epigenome, the role of ultrasound in plant-to-plant communication, and whether there is a specific, sound perceiving organ, etc., were also presented. In addition, a predictive vision is described of how ultrasonication of plants and ultrasound detection emitted by plants can be used in the future to develop green and sustainable agricultural and horticultural technologies. Furthermore, based on our current knowledge, a proposal is presented to combine them with machine learning and artificial intelligence for developing novel production technologies.
Plant memory plays an important role in the efficient and rapid acclimation to a swiftly changing environment. In addition, since plant memory can be inherited, it is also of adaptive and evolutionary importance. The ability of a plant to store, retain, retrieve and delete information on acquired experience is based on cellular, biochemical and molecular networks in the plants. This review offers an up-to-date overview on the formation, types, checkpoints of plant memory based on our current knowledge and focusing on its transcriptional aspects, the transcriptional memory. Roles of long and small non-coding RNAs are summarized in the regulation, formation and the cooperation between the different layers of the plant memory, i.e. in the establishment of epigenetic changes associated with memory formation in plants. The RNA interference mechanisms at the RNA and DNA level and the interplays between them are also presented. Furthermore, this review gives an insight of how exploitation of plant transcriptional memory may provide new opportunities for elaborating promising cost-efficient, and effective strategies to cope with the ever-changing environmental perturbations, caused by climate change. The potentials of plant memory-based methods, such as crop priming, cross acclimatization, memory modification by miRNAs and associative use of plant memory, in the future's agriculture are also discussed.
Background: D. giganteiformis subsp. pontederae and D. superbus subsp. superbus are protected or critically endangered species in several European regions; therefore, developing an efficient in vitro micropropagation protocol is essential for germplasm conservation and recultivation purposes. Results: After germination, one-nodal segments of both species were transferred onto several MS media supplemented with 3% sucrose and different types of cytokinins (at a concentration of 4.5 µM) alongside 0.54 µM 1-naphthaleneacetic acid (NAA) for the multiplication phase for 3 weeks. The shoot clusters were subsequently transferred onto elongation medium (plant growth regulator-free MS medium) for 3 weeks. Individual shoots separated from the shoot clusters were cultured on MS medium supplemented with 0.54 µM NAA and 2% sucrose for 3 weeks for rooting. Taking into account the effects and after-effects of cytokinins, we found that the most suitable cytokinin for D. giganteiformis subsp. pontederae was N-(2-isopentenyl)-adenine (2-iP), while for D. superbus subsp. superbus it was meta-topolin (mT). Conclusions: In vitro micropropagation methods were developed for two endangered Dianthus species (D. giganteiformis subsp. pontederae and D. superbus subsp. superbus) by determining the optimal type of cytokinin to be used during the multiplication phase. The protocols are designed to produce large quantities of propagation material for recultivation, educational, and research purposes within three months.
Plant memory is an adaptive mechanism that plants can use to increase their fitness and cope with adverse environmental stresses. In this study, mRNA-sequencing (mRNA-seq), whole-genome bisulfite sequencing (WGBS) and real-time quantitative PCR (RT-qPCR) methods were applied for evaluating formation and maintenance of somatic transcriptional memory after treatment with ultrasound and drought stimuli in tomatoes. In addition, the effects of repeated stimuli, as well as the association-forming ability of plants were studied when they were trained previously with combined stimuli. Two days after exposure to the two stimuli applied alone or in combination, significantly altered gene transcription and DNA methylation were revealed. Using four selected target genes, we demonstrated that plants memorized stimuli for 5-10 d, in a gene- and stimulus-dependent way. The repeated application of the stimuli caused various alterations in gene transcription behavior, such as habituation, sustained induction or modified reinduction. Plants were able to use one conditioned stimulus as a predictor of the other, unconditioned one, after conditioning in the case of 3 out of 4 target genes, and used their transcriptional memory associatively. The exploitation of plant memory and associative learning may contribute to the development of new strategies to increase plant stress resilience.