Rodrigo Vargas

Dr. Rodrigo Vargas

Department of Plant & Soil Science, University of Delaware, Newark, DE 19716, USA
orcid

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 February 2017 in PLOS ONE
Verified
Journal Article
Open access
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Tomislav HenglTomislav Hengl
Tomislav Hengl
JJJorge Mendes de Jesus
Jorge Mendes de Jesus
GHGerard B. M. Heuvelink
Gerard B. M. Heuvelink
MGMaria Ruiperez Gonzalez
Maria Ruiperez Gonzalez
MKMilan Kilibarda
Milan Kilibarda
BKBas Kempen
Bas Kempen
This paper describes the technical development and accuracy assessment of the most recent and improved version of the SoilGrids system at 250m resolution (June 2016 update). SoilGrids provides global predictions for standard numeric soil properties (organic carbon, bulk density, Cation Exchange Capacity (CEC), pH, soil texture fractions and coarse fragments) at seven standard depths (0, 5, 15, 30, 60, 100 and 200 cm), in addition to predictions of depth to bedrock and distribution of soil classes based on the World Reference Base (WRB) and USDA classification systems (ca. 280 raster layers in total). Predictions were based on ca. 150,000 soil profiles used for training and a stack of 158 remote sensing-based soil covariates (primarily derived from MODIS land products, SRTM DEM derivatives, climatic images and global landform and lithology maps), which were used to fit an ensemble of machine learning methods—random forest and gradient boosting and/or multinomial logistic regression—as implemented in the R packages ranger, xgboost, nnet and caret. The results of 10–fold cross-validation show that the ensemble models explain between 56% (coarse fragments) and 83% (pH) of variation with an overall average of 61%. Improvements in the relative accuracy considering the amount of variation explained, in comparison to the previous version of SoilGrids at 1 km spatial resolution, range from 60 to 230%. Improvements can be attributed to: (1) the use of machine learning instead of linear regression, (2) to considerable investments in preparing finer resolution covariate layers and (3) to insertion of additional soil profiles. Further development of SoilGrids could include refinement of methods to incorporate input uncertainties and derivation of posterior probability distributions (per pixel), and further automation of spatial modeling so that soil maps can be generated for potentially hundreds of soil variables. Another area of future research is the development of methods for multiscale merging of SoilGrids predictions with local and/or national gridded soil products (e.g. up to 50 m spatial resolution) so that increasingly more accurate, complete and consistent global soil information can be produced. SoilGrids are available under the Open Data Base License.

7 August 2017 in Nature Ecology & Evolution
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Journal Article
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HAHenry Adams
Henry Adams
MZMelanie J. B. Zeppel
Melanie J. B. Zeppel
WAWilliam R. L. Anderegg
William R. L. Anderegg
HHHenrik Hartmann
Henrik Hartmann
SLSimon M. Landhäusser
Simon M. Landhäusser
NMNate G. McDowell
Nate G. McDowell

12 October 2010 in Philosophical Transactions of the Royal Society B: Biological Sciences
Verified
Journal Article
Closed access
ARAndrew Richardson
Andrew Richardson
TBT. Andy Black
T. Andy Black
PCPhilippe Ciais
Philippe Ciais
NDNicolas Delbart
Nicolas Delbart
MFMark A. Friedl
Mark A. Friedl
AVAndrej Varlagin
Andrej Varlagin
We use eddy covariance measurements of net ecosystem productivity (NEP) from 21 FLUXNET sites (153 site-years of data) to investigate relationships between phenology and productivity (in terms of both NEP and gross ecosystem photosynthesis, GEP) in temperate and boreal forests. Results are used to evaluate the plausibility of four different conceptual models. Phenological indicators were derived from the eddy covariance time series, and from remote sensing and models. We examine spatial patterns (across sites) and temporal patterns (across years); an important conclusion is that it is likely that neither of these accurately represents how productivity will respond to future phenological shifts resulting from ongoing climate change. In spring and autumn, increased GEP resulting from an ‘extra’ day tends to be offset by concurrent, but smaller, increases in ecosystem respiration, and thus the effect on NEP is still positive. Spring productivity anomalies appear to have carry-over effects that translate to productivity anomalies in the following autumn, but it is not clear that these result directly from phenological anomalies. Finally, the productivity of evergreen needleleaf forests is less sensitive to phenology than is productivity of deciduous broadleaf forests. This has implications for how climate change may drive shifts in competition within mixed-species stands.

29 April 2014 in Annual Review of Plant Biology
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Journal Article
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Michael DietzeMichael Dietze
Michael Dietze
ASAnna Sala
Anna Sala
MCMariah S. Carbone
Mariah S. Carbone
CCClaudia I. Czimczik
Claudia I. Czimczik
JMJoshua A. Mantooth
Joshua A. Mantooth
RVRodrigo Vargas
Rodrigo Vargas
Nonstructural carbon (NSC) provides the carbon and energy for plant growth and survival. In woody plants, fundamental questions about NSC remain unresolved: Is NSC storage an active or passive process? Do older NSC reserves remain accessible to the plant? How is NSC depletion related to mortality risk? Herein we review conceptual and mathematical models of NSC dynamics, recent observations and experiments at the organismal scale, and advances in plant physiology that have provided a better understanding of the dynamics of woody plant NSC. Plants preferentially use new carbon but can access decade-old carbon when the plant is stressed or physically damaged. In addition to serving as a carbon and energy source, NSC plays important roles in phloem transport, osmoregulation, and cold tolerance, but how plants regulate these competing roles and NSC depletion remains elusive. Moving forward requires greater synthesis of models and data and integration across scales from -omics to ecology.

27 September 2011 in Global Change Biology
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Journal Article
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ARAndrew Richardson
Andrew Richardson
RARyan S. Anderson
Ryan S. Anderson
MAM. Altaf Arain
M. Altaf Arain
ABAlan G. Barr
Alan G. Barr
GBGil Bohrer
Gil Bohrer
YXYongkang Xue
Yongkang Xue

30 January 2018 in Proceedings of the National Academy of Sciences
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Journal Article
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Michael DietzeMichael Dietze
Michael Dietze
AFAndrew Fox
Andrew Fox
LBLindsay M. Beck-Johnson
Lindsay M. Beck-Johnson
JBJulio L. Betancourt
Julio L. Betancourt
MHMevin B. Hooten
Mevin B. Hooten
EWEthan P. White
Ethan P. White
Two foundational questions about sustainability are “How are ecosystems and the services they provide going to change in the future?” and “How do human decisions affect these trajectories?” Answering these questions requires an ability to forecast ecological processes. Unfortunately, most ecological forecasts focus on centennial-scale climate responses, therefore neither meeting the needs of near-term (daily to decadal) environmental decision-making nor allowing comparison of specific, quantitative predictions to new observational data, one of the strongest tests of scientific theory. Near-term forecasts provide the opportunity to iteratively cycle between performing analyses and updating predictions in light of new evidence. This iterative process of gaining feedback, building experience, and correcting models and methods is critical for improving forecasts. Iterative, near-term forecasting will accelerate ecological research, make it more relevant to society, and inform sustainable decision-making under high uncertainty and adaptive management. Here, we identify the immediate scientific and societal needs, opportunities, and challenges for iterative near-term ecological forecasting. Over the past decade, data volume, variety, and accessibility have greatly increased, but challenges remain in interoperability, latency, and uncertainty quantification. Similarly, ecologists have made considerable advances in applying computational, informatic, and statistical methods, but opportunities exist for improving forecast-specific theory, methods, and cyberinfrastructure. Effective forecasting will also require changes in scientific training, culture, and institutions. The need to start forecasting is now; the time for making ecology more predictive is here, and learning by doing is the fastest route to drive the science forward.