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Mr. Geovani Ribeiro
Biotechnologist

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0 Microbiology
0 Molecular Evolution
0 Virology
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Journal article
Published: 16 April 2021 in Viruses
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Dengue virus (DENV) is a mosquito-borne viral pathogen that plagues many tropical-climate nations around the world, including Brazil. Molecular epidemiology is a growing and increasingly invaluable tool for understanding the dispersal, persistence, and diversity of this impactful virus. In this study, plasma samples (n = 824) from individuals with symptoms consistent with an arboviral febrile illness were analyzed to identity the molecular epidemiological dynamics of DENV circulating in the Brazilian state of Amapá. Twelve DENV type 1 (DENV-1) genomes were identified, which were phylogenetically related to the BR4 lineage of genotype V. Phylodynamics analysis suggested that DENV-1 BR-4 was introduced into Amapá around early 2010, possibly from other states in northern Brazil. We also found unique amino acids substitutions in the DENV-1 envelope and NS5 protein sequences in the Amapá isolates. Characterization of the DENV-1 BR-4 sequences highlights the potential of this new lineage to drive outbreaks of dengue in the Amazon region.

ACS Style

Geovani Ribeiro; Danielle Gill; Edcelha Ribeiro; Fred Monteiro; Vanessa Morais; Roberta Marcatti; Marlisson Rego; Emerson Araújo; Steven Witkin; Fabiola Villanova; Xutao Deng; Ester Sabino; Eric Delwart; Élcio Leal; Antonio da Costa. Adaptive Evolution of New Variants of Dengue Virus Serotype 1 Genotype V Circulating in the Brazilian Amazon. Viruses 2021, 13, 689 .

AMA Style

Geovani Ribeiro, Danielle Gill, Edcelha Ribeiro, Fred Monteiro, Vanessa Morais, Roberta Marcatti, Marlisson Rego, Emerson Araújo, Steven Witkin, Fabiola Villanova, Xutao Deng, Ester Sabino, Eric Delwart, Élcio Leal, Antonio da Costa. Adaptive Evolution of New Variants of Dengue Virus Serotype 1 Genotype V Circulating in the Brazilian Amazon. Viruses. 2021; 13 (4):689.

Chicago/Turabian Style

Geovani Ribeiro; Danielle Gill; Edcelha Ribeiro; Fred Monteiro; Vanessa Morais; Roberta Marcatti; Marlisson Rego; Emerson Araújo; Steven Witkin; Fabiola Villanova; Xutao Deng; Ester Sabino; Eric Delwart; Élcio Leal; Antonio da Costa. 2021. "Adaptive Evolution of New Variants of Dengue Virus Serotype 1 Genotype V Circulating in the Brazilian Amazon." Viruses 13, no. 4: 689.

Journal article
Published: 31 March 2021 in Viruses
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Echoviruses (E) are a diverse group of viruses responsible for various pathological conditions in humans including aseptic meningitis, myocarditis, and acute flaccid paralysis. The detection and identification of echovirus genotypes in clinical samples is challenging due to its high genetic diversity. Here, we report the complete genome sequences of nine echoviruses, obtained by next-generation sequencing of 238 fecal samples from individuals with gastroenteritis in regions of Brazil. Detected viruses were classified into six genotypes: Three E1 sequences (BRA/TO-028, BRA/TO-069 and BRA/TO-236), one E3 (BRA/TO-018), one E11 (BRA/TO-086), one E20 (BRA/TO-016), two E29 (BRA/TO-030 and BRA/TO-193), and one E30 sequence (BRA/TO-032). Phylogenetic analysis indicated that the echoviruses E1 and E29 circulating in Brazil are divergent from strains circulating worldwide. The genotype diversity identified in our study may under-represent the total echovirus diversity in Brazil because of the small sample size and the restricted geographical distribution covered by the survey.

ACS Style

Endrya Do Socorro Fôro Ramos; Ulisses Rosa; Geovani De Oliveira Ribeiro; Fabiola Villanova; Flávio de Pádua Milagres; Rafael Brustulin; Vanessa Dos Santos Morais; Mayara Bertanhe; Roberta Marcatti; Emerson Araújo; Steven Witkin; Eric Delwart; Adriana Luchs; Antonio da Costa; Élcio Leal. High Heterogeneity of Echoviruses in Brazilian Children with Acute Gastroenteritis. Viruses 2021, 13, 595 .

AMA Style

Endrya Do Socorro Fôro Ramos, Ulisses Rosa, Geovani De Oliveira Ribeiro, Fabiola Villanova, Flávio de Pádua Milagres, Rafael Brustulin, Vanessa Dos Santos Morais, Mayara Bertanhe, Roberta Marcatti, Emerson Araújo, Steven Witkin, Eric Delwart, Adriana Luchs, Antonio da Costa, Élcio Leal. High Heterogeneity of Echoviruses in Brazilian Children with Acute Gastroenteritis. Viruses. 2021; 13 (4):595.

Chicago/Turabian Style

Endrya Do Socorro Fôro Ramos; Ulisses Rosa; Geovani De Oliveira Ribeiro; Fabiola Villanova; Flávio de Pádua Milagres; Rafael Brustulin; Vanessa Dos Santos Morais; Mayara Bertanhe; Roberta Marcatti; Emerson Araújo; Steven Witkin; Eric Delwart; Adriana Luchs; Antonio da Costa; Élcio Leal. 2021. "High Heterogeneity of Echoviruses in Brazilian Children with Acute Gastroenteritis." Viruses 13, no. 4: 595.

Journal article
Published: 08 August 2020 in Viruses
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Viruses are the most diverse and abundant microorganisms on earth, highly adaptive to a wide range of hosts. Viral diversity within invertebrate hosts has gained notoriety in recent years in public health as several such viruses have been of medical importance. Aedes aegypti serves as a vector for several viruses that have caused epidemics within the last year throughout Brazil; including Dengue, Zika and Chikungunya. This study aimed to identify new viral agents within Aedes aegypti mosquito in a city of the Amazonian region, where it is highly endemic. Metagenomic investigation was performed on 60 mosquito pools and viral RNA sequences present in their microbiota were characterized using genomic and phylogenetic tools. In total, we identified five putative novel virus species related to the Sobemovirus genus, Iflavirus genus and Permutatetraviridae family. These findings indicate a diverse taxonomy of viruses present in the mosquito microbiota of the Amazon, the region with the greatest invertebrate diversity in the world.

ACS Style

Geovani De Oliveira Ribeiro; Vanessa S. Morais; Fred Julio Costa Monteiro; Edcelha Soares D’Athaide Ribeiro; Marlisson Octavio Da S Rego; Raimundo Nonato Picanço Souto; Fabiola Villanova; Roozbeh Tahmasebi; Philip Michael Hefford; Xutao Deng; Eric Delwart; Ester Cerdeira Sabino; Licia Natal Fernandes; Antonio Charlys Da Costa; Élcio Leal. Aedes aegypti from Amazon Basin Harbor High Diversity of Novel Viral Species. Viruses 2020, 12, 866 .

AMA Style

Geovani De Oliveira Ribeiro, Vanessa S. Morais, Fred Julio Costa Monteiro, Edcelha Soares D’Athaide Ribeiro, Marlisson Octavio Da S Rego, Raimundo Nonato Picanço Souto, Fabiola Villanova, Roozbeh Tahmasebi, Philip Michael Hefford, Xutao Deng, Eric Delwart, Ester Cerdeira Sabino, Licia Natal Fernandes, Antonio Charlys Da Costa, Élcio Leal. Aedes aegypti from Amazon Basin Harbor High Diversity of Novel Viral Species. Viruses. 2020; 12 (8):866.

Chicago/Turabian Style

Geovani De Oliveira Ribeiro; Vanessa S. Morais; Fred Julio Costa Monteiro; Edcelha Soares D’Athaide Ribeiro; Marlisson Octavio Da S Rego; Raimundo Nonato Picanço Souto; Fabiola Villanova; Roozbeh Tahmasebi; Philip Michael Hefford; Xutao Deng; Eric Delwart; Ester Cerdeira Sabino; Licia Natal Fernandes; Antonio Charlys Da Costa; Élcio Leal. 2020. "Aedes aegypti from Amazon Basin Harbor High Diversity of Novel Viral Species." Viruses 12, no. 8: 866.

Journal article
Published: 18 February 2020 in Acta Tropica
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In Brazil, flaviviruses have caused massive outbreaks. Surveillance programs designed to monitor virus activity in vectors provides a system for mapping disease distribution and for identifying specific vector species for targeted control. The present study aimed to describe the detection, whole genome characterization and phylogenetic analysis of Ilheus virus (ILHV) and Iguape virus (IGUV) strains obtained from historical mosquito's samples. Twelve isolates of pooled mosquito specimens (inoculated in neonate mouse brain) collected in the state of São Paulo, Brazil, in 1993, 1994 and 1997 were investigated. Viral RNA was extracted and analyzed by qRT-PCR using Flavivirus genus-specific primers. Positive samples were sequenced and underwent phylogenetic analyses. Flavivirus was detected in 50% of the specimens. Positive samples were successfully Sanger sequenced. Three Anopholes cruzii pools collected in 1994 were positive for IGUV. One Culex sp. pool, one Anopheles triannulatus pool, and one Coquillettidia juxtamansonia pool, collected in 1994, were positive for ILHV. Metagenomic sequencing successfully characterize one ILHV and four IGUV full genomes, and revealed a high degree of homology between the Brazilian ILHV and IGUV strains and isolates available in GenBank. Phylogenetic analysis of partial ILHV NS5 gene revealed three distinct lineages (clades), an indication of genetic heterogeneity in strains circulating in Brazil. Nucleotide insertions and a high-level of nucleotide diversity were observed in the NS1 protein and capsid region of IGUV strains, respectively. Detection of ILHV and IGUV in mosquitoes from Southeastern Brazil confirms the historical circulation of these viruses in this area. Furthermore, this first evidence of ILHV in Anopheles triannulatus suggests the potential importance of Anopheles mosquitoes in the IGUV transmission cycle. Genomic and phylogenetic analysis of these viruses provided insights into their diversity and evolution, which are important for the emergence patterns of flaviviruses and their evolutionary trends in Brazil, an endemic country for several arbovirus. in In-depth studies of ILHV and IGUV including vector competence and molecular studies are needed to shed light on their epidemiology and potential risk of future emergence.

ACS Style

Mariana Sequetin Cunha; Adriana Luchs; Antonio Charlys Da Costa; Geovani De Oliveira Ribeiro; Fabiana Cristina Pereira Dos Santos; Juliana Silva Nogueira; Shirley Vasconcelos Komninakis; Robson Dos Santos Souza Marinho; Steven S. Witkin; Fabiola Villanova; Xutao Deng; Ester Cerdeira Sabino; Eric Delwart; Elcio Leal; Mauricio Nogueira; Paulo César Maiorka. Detection and characterization of Ilheus and Iguape virus genomes in historical mosquito samples from Southern Brazil. Acta Tropica 2020, 205, 105401 .

AMA Style

Mariana Sequetin Cunha, Adriana Luchs, Antonio Charlys Da Costa, Geovani De Oliveira Ribeiro, Fabiana Cristina Pereira Dos Santos, Juliana Silva Nogueira, Shirley Vasconcelos Komninakis, Robson Dos Santos Souza Marinho, Steven S. Witkin, Fabiola Villanova, Xutao Deng, Ester Cerdeira Sabino, Eric Delwart, Elcio Leal, Mauricio Nogueira, Paulo César Maiorka. Detection and characterization of Ilheus and Iguape virus genomes in historical mosquito samples from Southern Brazil. Acta Tropica. 2020; 205 ():105401.

Chicago/Turabian Style

Mariana Sequetin Cunha; Adriana Luchs; Antonio Charlys Da Costa; Geovani De Oliveira Ribeiro; Fabiana Cristina Pereira Dos Santos; Juliana Silva Nogueira; Shirley Vasconcelos Komninakis; Robson Dos Santos Souza Marinho; Steven S. Witkin; Fabiola Villanova; Xutao Deng; Ester Cerdeira Sabino; Eric Delwart; Elcio Leal; Mauricio Nogueira; Paulo César Maiorka. 2020. "Detection and characterization of Ilheus and Iguape virus genomes in historical mosquito samples from Southern Brazil." Acta Tropica 205, no. : 105401.

Journal article
Published: 09 December 2019 in Scientific Reports
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Diarrhea remains one of the most common causes of deaths in children. Although many studies have investigated the prevalence of enteric pathogens around the globe some diarrheal episodes remain unexplained. It is possible that some yet-unidentified viral agents could be related to these cases of gastroenteritis. By using viral metagenomics techniques, we screened 251 fecal samples of children between 0.5 to 2.5-year-old with acute diarrhea not associated with common pathogens. These children live in rural areas and have different levels of contact with animals such as pigs, cows and bats. Here we report a complete genome of one mammalian orthoreovirus (MRV) type 3, denoted TO-151/BR, detected in a female child in the state of Tocantins (north of Brazil). Brazilian TO-151/BR strain was classified as MRV-3 based on S1 phylogeny and was closely related to porcine Asian strains. Phylogenetic analyses showed that other segments were more similar to MRV-3s of different geographic locations and hosts, including human and bats, highlighting genome reassortment and lack of host-specific barriers. This is the first report of MRV-3 in South America and a hypothesis of a silent long-term circulation of this virus in Brazil has been raised.

ACS Style

Ulisses Alves Rosa; Geovani De Oliveira Ribeiro; Fabiola Villanova; Adriana Luchs; Flavio Milagres; Shirley Vasconcelos Komninakis; Roozbeh Tahmasebi; Márcia Cristina Alves Brito Sayão Lobato; Rafael Brustulin; Rogério Togisaki Das Chagas; Maria De Fátima Neves Dos Santos Abrão; Cassia Vitória De Deus Alves Soares; Rory J Tinker; Ramendra Pati Pandey; V. Samuel Raj; Ester Cerdeira Sabino; Xutao Deng; Eric Delwart; Antonio Charlys Da Costa; Élcio Leal. First identification of mammalian orthoreovirus type 3 by gut virome analysis in diarrheic child in Brazil. Scientific Reports 2019, 9, 1 -7.

AMA Style

Ulisses Alves Rosa, Geovani De Oliveira Ribeiro, Fabiola Villanova, Adriana Luchs, Flavio Milagres, Shirley Vasconcelos Komninakis, Roozbeh Tahmasebi, Márcia Cristina Alves Brito Sayão Lobato, Rafael Brustulin, Rogério Togisaki Das Chagas, Maria De Fátima Neves Dos Santos Abrão, Cassia Vitória De Deus Alves Soares, Rory J Tinker, Ramendra Pati Pandey, V. Samuel Raj, Ester Cerdeira Sabino, Xutao Deng, Eric Delwart, Antonio Charlys Da Costa, Élcio Leal. First identification of mammalian orthoreovirus type 3 by gut virome analysis in diarrheic child in Brazil. Scientific Reports. 2019; 9 (1):1-7.

Chicago/Turabian Style

Ulisses Alves Rosa; Geovani De Oliveira Ribeiro; Fabiola Villanova; Adriana Luchs; Flavio Milagres; Shirley Vasconcelos Komninakis; Roozbeh Tahmasebi; Márcia Cristina Alves Brito Sayão Lobato; Rafael Brustulin; Rogério Togisaki Das Chagas; Maria De Fátima Neves Dos Santos Abrão; Cassia Vitória De Deus Alves Soares; Rory J Tinker; Ramendra Pati Pandey; V. Samuel Raj; Ester Cerdeira Sabino; Xutao Deng; Eric Delwart; Antonio Charlys Da Costa; Élcio Leal. 2019. "First identification of mammalian orthoreovirus type 3 by gut virome analysis in diarrheic child in Brazil." Scientific Reports 9, no. 1: 1-7.

Journal article
Published: 10 February 2019 in Viruses
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Advancements in next-generation sequencing and bioinformatics have expanded our knowledge of the diversity of viruses (pathogens and non-pathogens) harbored by mosquitoes. Hubei reo-like virus 7 (HRLV 7) was recently detected by the virome analysis of fecal samples from migratory birds in Australia. We now report the detection of RNA-dependent RNA polymerase sequences of HRLV 7 in pools of Aedes aegypti and Culex quinquefasciatus mosquitoes species from the Brazilian Amazon forest. Phylogenetic inferences indicated that all HRLV 7 strains fall within the same independent clade. In addition, HRLV 7 shared a close ancestral lineage with the Dinovernavirus genus of the Reoviridae family. Our findings indicate that HRLV 7 is present in two species of mosquitoes.

ACS Style

Geovani De Oliveira Ribeiro; Fred Julio Costa Monteiro; Marlisson Octavio Da S Rego; Edcelha Soares D’Athaide Ribeiro; Daniela Funayama De Castro; Marcos Montani Caseiro; Robson Dos Santos Souza Marinho; Shirley Vasconcelos Komninakis; Steven S. Witkin; Xutao Deng; Eric Delwart; Ester Cerdeira Sabino; Antonio Charlys Da Costa; Élcio Leal. Detection of RNA-Dependent RNA Polymerase of Hubei Reo-Like Virus 7 by Next-Generation Sequencing in Aedes aegypti and Culex quinquefasciatus Mosquitoes from Brazil. Viruses 2019, 11, 147 .

AMA Style

Geovani De Oliveira Ribeiro, Fred Julio Costa Monteiro, Marlisson Octavio Da S Rego, Edcelha Soares D’Athaide Ribeiro, Daniela Funayama De Castro, Marcos Montani Caseiro, Robson Dos Santos Souza Marinho, Shirley Vasconcelos Komninakis, Steven S. Witkin, Xutao Deng, Eric Delwart, Ester Cerdeira Sabino, Antonio Charlys Da Costa, Élcio Leal. Detection of RNA-Dependent RNA Polymerase of Hubei Reo-Like Virus 7 by Next-Generation Sequencing in Aedes aegypti and Culex quinquefasciatus Mosquitoes from Brazil. Viruses. 2019; 11 (2):147.

Chicago/Turabian Style

Geovani De Oliveira Ribeiro; Fred Julio Costa Monteiro; Marlisson Octavio Da S Rego; Edcelha Soares D’Athaide Ribeiro; Daniela Funayama De Castro; Marcos Montani Caseiro; Robson Dos Santos Souza Marinho; Shirley Vasconcelos Komninakis; Steven S. Witkin; Xutao Deng; Eric Delwart; Ester Cerdeira Sabino; Antonio Charlys Da Costa; Élcio Leal. 2019. "Detection of RNA-Dependent RNA Polymerase of Hubei Reo-Like Virus 7 by Next-Generation Sequencing in Aedes aegypti and Culex quinquefasciatus Mosquitoes from Brazil." Viruses 11, no. 2: 147.

Brief report
Published: 28 December 2018 in Viruses
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Enterovirus B73 is a new member of the Enterovirus B species. First detected in the USA, it has been subsequently identified in China, India, Oman, and the Netherlands. In this study, we characterize the first B73 strain (named TO-127) to be detected in South America. TO-127 was obtained from a child with acute gastroenteritis living in a rural area in Northern Brazil. The subject was not infected with any known enteric pathogens such as norovirus, rotavirus, helminths, or enteric bacteria. Analysis of the nearly full-length TO-127 genome (6993 nt) indicated a 74–75% nucleotide similarity with EV-B73 strains from other countries. Evolutionary analysis suggests that B73 is endemic and widespread.

ACS Style

Geovani De Oliveira Ribeiro; Adriana Luchs; Flávio Augusto De Pádua Milagres; Shirley Vasconcelos Komninakis; Danielle Elise Gill; Márcia Cristina Alves Brito Sayão Lobato; Rafael Brustulin; Rogério Togisaki Das Chagas; Maria De Fátima Neves Dos Santos Abrão; Cassia Vitória De Deus Alves Soares; Steven S. Witkin; Fabiola Villanova; Xutao Deng; Ester Cerdeira Sabino; Eric Delwart; Antonio Charlys Da Costa; Élcio Leal. Detection and Characterization of Enterovirus B73 from a Child in Brazil. Viruses 2018, 11, 16 .

AMA Style

Geovani De Oliveira Ribeiro, Adriana Luchs, Flávio Augusto De Pádua Milagres, Shirley Vasconcelos Komninakis, Danielle Elise Gill, Márcia Cristina Alves Brito Sayão Lobato, Rafael Brustulin, Rogério Togisaki Das Chagas, Maria De Fátima Neves Dos Santos Abrão, Cassia Vitória De Deus Alves Soares, Steven S. Witkin, Fabiola Villanova, Xutao Deng, Ester Cerdeira Sabino, Eric Delwart, Antonio Charlys Da Costa, Élcio Leal. Detection and Characterization of Enterovirus B73 from a Child in Brazil. Viruses. 2018; 11 (1):16.

Chicago/Turabian Style

Geovani De Oliveira Ribeiro; Adriana Luchs; Flávio Augusto De Pádua Milagres; Shirley Vasconcelos Komninakis; Danielle Elise Gill; Márcia Cristina Alves Brito Sayão Lobato; Rafael Brustulin; Rogério Togisaki Das Chagas; Maria De Fátima Neves Dos Santos Abrão; Cassia Vitória De Deus Alves Soares; Steven S. Witkin; Fabiola Villanova; Xutao Deng; Ester Cerdeira Sabino; Eric Delwart; Antonio Charlys Da Costa; Élcio Leal. 2018. "Detection and Characterization of Enterovirus B73 from a Child in Brazil." Viruses 11, no. 1: 16.

Journal article
Published: 24 November 2018 in Viruses
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Classical insect-specific flaviviruses (cISFs) have been widely detected in different countries in the last decades. Here, we characterize the near full-length genomes of two cISFs detected in mosquitoes collected in the city of Macapá, state of Amapá, Amazon region of Brazil. A total of 105 pools of female mosquitos were analyzed by next-generation sequencing (NGS). Comparative genomics and phylogenetic analysis identified three strains of cell fusing agent virus (CFAV) and two of Culex flavivirus (CxFV). All sequences were obtained from pools of Culex sp., except for one sequence of CFAV detected in a pool of Aedes aegypti. Both CxFV strains are phylogenetically related to a strain isolated in 2012 in the Southeast region of Brazil. The CFAV strains are the first of this species to be identified in Brazil and one of them is highly divergent from other strains of CFAV that have been detected worldwide. In conclusion, CFAV and CxFV, circulate in mosquitoes in Brazil. One strain of CFAV is highly divergent from others previously described, suggesting that a novel strain of CFAV is present in this region.

ACS Style

Licia Natal Fernandes; Thaís De Moura Coletti; Fred Julio Costa Monteiro; Marlisson Octavio Da Silva Rego; Edcelha Soares D'Athaide Ribeiro; Geovani De Oliveira Ribeiro; Robson Dos Santos Souza Marinho; Shirley Vasconcelos Komninakis; Steven S. Witkin; Xutao Deng; Eric Delwart; Ester Cerdeira Sabino; Élcio Leal; Antonio Charlys Da Costa. A Novel Highly Divergent Strain of Cell Fusing Agent Virus (CFAV) in Mosquitoes from the Brazilian Amazon Region. Viruses 2018, 10, 666 .

AMA Style

Licia Natal Fernandes, Thaís De Moura Coletti, Fred Julio Costa Monteiro, Marlisson Octavio Da Silva Rego, Edcelha Soares D'Athaide Ribeiro, Geovani De Oliveira Ribeiro, Robson Dos Santos Souza Marinho, Shirley Vasconcelos Komninakis, Steven S. Witkin, Xutao Deng, Eric Delwart, Ester Cerdeira Sabino, Élcio Leal, Antonio Charlys Da Costa. A Novel Highly Divergent Strain of Cell Fusing Agent Virus (CFAV) in Mosquitoes from the Brazilian Amazon Region. Viruses. 2018; 10 (12):666.

Chicago/Turabian Style

Licia Natal Fernandes; Thaís De Moura Coletti; Fred Julio Costa Monteiro; Marlisson Octavio Da Silva Rego; Edcelha Soares D'Athaide Ribeiro; Geovani De Oliveira Ribeiro; Robson Dos Santos Souza Marinho; Shirley Vasconcelos Komninakis; Steven S. Witkin; Xutao Deng; Eric Delwart; Ester Cerdeira Sabino; Élcio Leal; Antonio Charlys Da Costa. 2018. "A Novel Highly Divergent Strain of Cell Fusing Agent Virus (CFAV) in Mosquitoes from the Brazilian Amazon Region." Viruses 10, no. 12: 666.