NADHIRAH ZAKARIA

Mrs. NADHIRAH ZAKARIA

Universiti Putra Malaysia (UPM)

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 April 2021 in Biology
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Journal Article
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HOW SWEN YAPHOW SWEN YAP
HOW SWEN YAP
NADHIRAH ZAKARIANADHIRAH ZAKARIA
NADHIRAH ZAKARIA
Azham ZulkharnainAzham Zulkharnain
Azham Zulkharnain
Suriana SabriSuriana Sabri
Suriana Sabri
CGClaudio Gómez-Fuentes
Claudio Gómez-Fuentes
Siti Aqlima AhmadSiti Aqlima Ahmad
Siti Aqlima Ahmad
The increased usage of petroleum oils in cold regions has led to widespread oil pollutants in soils. The harsh environmental conditions in cold environments allow the persistence of these oil pollutants in soils for more than 20 years, raising adverse threats to the ecosystem. Microbial bioremediation was proposed and employed as a cost-effective tool to remediate petroleum hydrocarbons present in soils without significantly posing harmful side effects. However, the conventional hydrocarbon bioremediation requires a longer time to achieve the clean-up standard due to various environmental factors in cold regions. Recent biotechnological improvements using biostimulation and/or bioaugmentation strategies are reported and implemented to enhance the hydrocarbon removal efficiency under cold conditions. Thus, this review focuses on the enhanced bioremediation for hydrocarbon-polluted soils in cold regions, highlighting in situ and ex situ approaches and few potential enhancements via the exploitation of molecular and microbial technology in response to the cold condition. The bibliometric analysis of the hydrocarbon bioremediation research in cold regions is also presented.

17 February 2021 in Microorganisms
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NADHIRAH ZAKARIANADHIRAH ZAKARIA
NADHIRAH ZAKARIA
Peter ConveyPeter Convey
Peter Convey
CGClaudio Gómez-Fuentes
Claudio Gómez-Fuentes
Azham ZulkharnainAzham Zulkharnain
Azham Zulkharnain
Suriana SabriSuriana Sabri
Suriana Sabri
Siti Aqlima AhmadSiti Aqlima Ahmad
Siti Aqlima Ahmad
Bioremediation of hydrocarbons has received much attention in recent decades, particularly relating to fuel and other oils. While of great relevance globally, there has recently been increasing interest in hydrocarbon bioremediation in the marine environments of Antarctica. To provide an objective assessment of the research interest in this field we used VOSviewer software to analyze publication data obtained from the ScienceDirect database covering the period 1970 to the present, but with a primary focus on the years 2000–2020. A bibliometric analysis of the database allowed identification of the co-occurrence of keywords. There was an increasing trend over time for publications relating to oil bioremediation in maritime Antarctica, including both studies on marine bioremediation and of the metabolic pathways of hydrocarbon degradation. Studies of marine anaerobic degradation remain under-represented compared to those of aerobic degradation. Emerging keywords in recent years included bioprospecting, metagenomic, bioindicator, and giving insight into changing research foci, such as increasing attention to microbial diversity. The study of microbial genomes using metagenomic approaches or whole genome studies is increasing rapidly and is likely to drive emerging fields in future, including rapid expansion of bioprospecting in diverse fields of biotechnology.

27 August 2020 in Sustainability
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MAMansur Abdulrasheed
Mansur Abdulrasheed
Azham ZulkharnainAzham Zulkharnain
Azham Zulkharnain
NADHIRAH ZAKARIANADHIRAH ZAKARIA
NADHIRAH ZAKARIA
AFAhmad Roslee Ahmad Fareez
Ahmad Roslee Ahmad Fareez
KKKhalilah Abdul Khalil
Khalilah Abdul Khalil
Siti Aqlima AhmadSiti Aqlima Ahmad
Siti Aqlima Ahmad
Petroleum hydrocarbons, notably diesel oil, are the main energy source for running amenities in the Antarctic region and are the major cause of pollution in this area. Diesel oil spills are one of the major challenges facing management of the Antarctic environment. Bioremediation using bacteria can be an effective and eco-friendly approach for their remediation. However, since the introduction of non-native organisms, including microorganisms, into the Antarctic or between the distinct biogeographical regions within the continent is not permitted under the Antarctic Treaty, it is crucial to discover native oil-degrading, psychrotolerant microorganisms that can be used in diesel bioremediation. The primary aim of the current study is to optimize the conditions for growth and diesel degradation activity of an Antarctic local bacterium, Arthrobacter sp. strain AQ5-05, using the Plackett-Burman approach and response surface method (RSM) via a central composite design (CCD) approach. Based on this approach, temperature, pH, and salinity were calculated to be optimum at 16.30 °C, pH 7.67 and 1.12% (w/v), respectively. A second order polynomial regression model very accurately represented the experimental figures’ interpretation. These optimized environmental conditions increased diesel degradation from 34.5% (at 10 °C, pH 7.00 and 1.00% (w/v) salinity) to 56.4%. Further investigation of the kinetics of diesel reduction by strain AQ5-05 revealed that the Teissier model had the lowest RMSE and AICC values. The calculated values for the Teissier constants of maximal growth rate, half-saturation rate constant for the maximal growth, and half inhibition constants (μmax, Ks, and Ki), were 0.999 h−1, 1.971% (v/v) and 1.764% (v/v), respectively. The data obtained therefore confirmed the potential application of this cold-tolerant strain in the bioremediation of diesel-contaminated Antarctic soils at low temperature.

12 November 2022 in Catalysts
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Gillian Li Yin LeeGillian Li Yin Lee
Gillian Li Yin Lee
NADHIRAH ZAKARIANADHIRAH ZAKARIA
NADHIRAH ZAKARIA
HFHiroyuki Futamata
Hiroyuki Futamata
KSKenshi Suzuki
Kenshi Suzuki
Azham ZulkharnainAzham Zulkharnain
Azham Zulkharnain
Siti Aqlima AhmadSiti Aqlima Ahmad
Siti Aqlima Ahmad
Phenol is an important pollutant widely discharged as a component of hydrocarbon fuels, but its degradation in cold regions is challenging due to the harsh environmental conditions. To date, there is little information available concerning the capability for phenol biodegradation by indigenous Antarctic bacteria. In this study, enzyme activities and genes encoding phenol degradative enzymes identified using whole genome sequencing (WGS) were investigated to determine the pathway(s) of phenol degradation of Arthrobacter sp. strains AQ5-05 and AQ5-06, originally isolated from Antarctica. Complete phenol degradative genes involved only in the ortho-cleavage were detected in both strains. This was validated using assays of the enzymes catechol 1,2-dioxygenase and catechol 2,3-dioxygenase, which indicated the activity of only catechol 1,2-dioxygenase in both strains, in agreement with the results from the WGS. Both strains were psychrotolerant with the optimum temperature for phenol degradation, being between 10 and 15 °C. This study suggests the potential use of cold-adapted bacteria in the bioremediation of phenol pollution in cold environments.

3 June 2021 in Microorganisms
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NADHIRAH ZAKARIANADHIRAH ZAKARIA
NADHIRAH ZAKARIA
CGClaudio Gómez-Fuentes
Claudio Gómez-Fuentes
KKKhalilah Abdul Khalil
Khalilah Abdul Khalil
Peter ConveyPeter Convey
Peter Convey
AFAhmad Roslee Ahmad Fareez
Ahmad Roslee Ahmad Fareez
Siti Aqlima AhmadSiti Aqlima Ahmad
Siti Aqlima Ahmad
Hydrocarbon pollution is widespread around the globe and, even in the remoteness of Antarctica, the impacts of hydrocarbons from anthropogenic sources are still apparent. Antarctica’s chronically cold temperatures and other extreme environmental conditions reduce the rates of biological processes, including the biodegradation of pollutants. However, the native Antarctic microbial diversity provides a reservoir of cold-adapted microorganisms, some of which have the potential for biodegradation. This study evaluated the diesel hydrocarbon-degrading ability of a psychrotolerant marine bacterial consortium obtained from the coast of the north-west Antarctic Peninsula. The consortium’s growth conditions were optimised using one-factor-at-a-time (OFAT) and statistical response surface methodology (RSM), which identified optimal growth conditions of pH 8.0, 10 °C, 25 ppt NaCl and 1.5 g/L NH4NO3. The predicted model was highly significant and confirmed that the parameters’ salinity, temperature, nitrogen concentration and initial diesel concentration significantly influenced diesel biodegradation. Using the optimised values generated by RSM, a mass reduction of 12.23 mg/mL from the initial 30.518 mg/mL (4% (w/v)) concentration of diesel was achieved within a 6 d incubation period. This study provides further evidence for the presence of native hydrocarbon-degrading bacteria in non-contaminated Antarctic seawater.

Verified
Journal Article
Open access
PDF file
Gillian Li Yin LeeGillian Li Yin Lee
Gillian Li Yin Lee
NADHIRAH ZAKARIANADHIRAH ZAKARIA
NADHIRAH ZAKARIA
Peter ConveyPeter Convey
Peter Convey
HFHiroyuki Futamata
Hiroyuki Futamata
Azham ZulkharnainAzham Zulkharnain
Azham Zulkharnain
Siti Aqlima AhmadSiti Aqlima Ahmad
Siti Aqlima Ahmad
Study of the potential of Antarctic microorganisms for use in bioremediation is of increasing interest due to their adaptations to harsh environmental conditions and their metabolic potential in removing a wide variety of organic pollutants at low temperature. In this study, the psychrotolerant bacterium Rhodococcus sp. strain AQ5-07, originally isolated from soil from King George Island (South Shetland Islands, maritime Antarctic), was found to be capable of utilizing phenol as sole carbon and energy source. The bacterium achieved 92.91% degradation of 0.5 g/L phenol under conditions predicted by response surface methodology (RSM) within 84 h at 14.8 °C, pH 7.05, and 0.41 g/L ammonium sulphate. The assembled draft genome sequence (6.75 Mbp) of strain AQ5-07 was obtained through whole genome sequencing (WGS) using the Illumina Hiseq platform. The genome analysis identified a complete gene cluster containing catA, catB, catC, catR, pheR, pheA2, and pheA1. The genome harbours the complete enzyme systems required for phenol and catechol degradation while suggesting phenol degradation occurs via the β-ketoadipate pathway. Enzymatic assay using cell-free crude extract revealed catechol 1,2-dioxygenase activity while no catechol 2,3-dioxygenase activity was detected, supporting this suggestion. The genomic sequence data provide information on gene candidates responsible for phenol and catechol degradation by indigenous Antarctic bacteria and contribute to knowledge of microbial aromatic metabolism and genetic biodiversity in Antarctica.