Diogo Pessoa

Mr. Diogo Pessoa

University of Coimbra, Centre for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 December 2020 in Sensors
Verified
Journal Article
Open access
PDF file
BRBruno Rocha
Bruno Rocha
Diogo PessoaDiogo Pessoa
Diogo Pessoa
AMAlda Marques
Alda Marques
PCPaulo De Carvalho
Paulo De Carvalho
Rui Pedro PaivaRui Pedro Paiva
Rui Pedro Paiva
(1) Background: Patients with respiratory conditions typically exhibit adventitious respiratory sounds (ARS), such as wheezes and crackles. ARS events have variable duration. In this work we studied the influence of event duration on automatic ARS classification, namely, how the creation of the Other class (negative class) affected the classifiers’ performance. (2) Methods: We conducted a set of experiments where we varied the durations of the other events on three tasks: crackle vs. wheeze vs. other (3 Class); crackle vs. other (2 Class Crackles); and wheeze vs. other (2 Class Wheezes). Four classifiers (linear discriminant analysis, support vector machines, boosted trees, and convolutional neural networks) were evaluated on those tasks using an open access respiratory sound database. (3) Results: While on the 3 Class task with fixed durations, the best classifier achieved an accuracy of 96.9%, the same classifier reached an accuracy of 81.8% on the more realistic 3 Class task with variable durations. (4) Conclusion: These results demonstrate the importance of experimental design on the assessment of the performance of automatic ARS classification algorithms. Furthermore, they also indicate, unlike what is stated in the literature, that the automatic classification of ARS is not a solved problem, as the algorithms’ performance decreases substantially under complex evaluation scenarios.

8 September 2020 in Sensors
Verified
Journal Article
Open access
PDF file
GYGürkan Yilmaz
Gürkan Yilmaz
RMRAPIN Michaël
RAPIN Michaël
Diogo PessoaDiogo Pessoa
Diogo Pessoa
BRBruno Rocha
Bruno Rocha
ASAntonio Moreira de Sousa
Antonio Moreira de Sousa
OCOlivier Chételat
Olivier Chételat
Lung sounds acquired by stethoscopes are extensively used in diagnosing and differentiating respiratory diseases. Although an extensive know-how has been built to interpret these sounds and identify diseases associated with certain patterns, its effective use is limited to individual experience of practitioners. This user-dependency manifests itself as a factor impeding the digital transformation of this valuable diagnostic tool, which can improve patient outcomes by continuous long-term respiratory monitoring under real-life conditions. Particularly patients suffering from respiratory diseases with progressive nature, such as chronic obstructive pulmonary diseases, are expected to benefit from long-term monitoring. Recently, the COVID-19 pandemic has also shown the lack of respiratory monitoring systems which are ready to deploy in operational conditions while requiring minimal patient education. To address particularly the latter subject, in this article, we present a sound acquisition module which can be integrated into a dedicated garment; thus, minimizing the role of the patient for positioning the stethoscope and applying the appropriate pressure. We have implemented a diaphragm-less acousto-electric transducer by stacking a silicone rubber and a piezoelectric film to capture thoracic sounds with minimum attenuation. Furthermore, we benchmarked our device with an electronic stethoscope widely used in clinical practice to quantify its performance.

16 July 2023 in Computer Methods and Programs in Biomedicine
Verified
Journal Article
Open access
Diogo PessoaDiogo Pessoa
Diogo Pessoa
BRBruno Machado Rocha
Bruno Machado Rocha
CSClaas Strodthoff
Claas Strodthoff
MGMaria Gomes
Maria Gomes
GRGuilherme Rodrigues
Guilherme Rodrigues
RPRui Pedro Paiva
Rui Pedro Paiva
Respiratory diseases are among the most significant causes of morbidity and mortality worldwide, causing substantial strain on society and health systems. Over the last few decades, there has been increasing interest in the automatic analysis of respiratory sounds and electrical impedance tomography (EIT). Nevertheless, no publicly available databases with both respiratory sound and EIT data are available. In this work, we have assembled the first open-access bimodal database focusing on the differential diagnosis of respiratory diseases (BRACETS: Bimodal Repository of Auscultation Coupled with Electrical Impedance Thoracic Signals). It includes simultaneous recordings of single and multi-channel respiratory sounds and EIT. Furthermore, we have proposed several machine learning-based baseline systems for automatically classifying respiratory diseases in six distinct evaluation tasks using respiratory sound and EIT (A1, A2, A3, B1, B2, B3). These tasks included classifying respiratory diseases at sample and subject levels. The performance of the classification models was evaluated using a 5-fold cross-validation scheme (with subject isolation between folds). The resulting database consists of 1097 respiratory sounds and 795 EIT recordings acquired from 78 adult subjects in two countries (Portugal and Greece). In the task of automatically classifying respiratory diseases, the baseline classification models have achieved the following average balanced accuracy: Task A1 - 77.9±13.1%; Task A2 - 51.6±9.7%; Task A3 - 38.6±13.1%; Task B1 - 90.0±22.4%; Task B2 - 61.4±11.8%; Task B3 - 50.8±10.6%. The creation of this database and its public release will aid the research community in developing automated methodologies to assess and monitor respiratory function, and it might serve as a benchmark in the field of digital medicine for managing respiratory diseases. Moreover, it could pave the way for creating multi-modal robust approaches for that same purpose.

7 August 2023 in Expert Systems with Applications
Verified
Journal Article
Closed access
YWYunan Wu
Yunan Wu
BRBruno Rocha
Bruno Rocha
Evangelos KaimakamisEvangelos Kaimakamis
Evangelos Kaimakamis
GCGrigorios-Aris Cheimariotis
Grigorios-Aris Cheimariotis
Georgios PetmezasGeorgios Petmezas
Georgios Petmezas
Nicos MaglaverasNicos Maglaveras
Nicos Maglaveras

19 October 2023
Verified
Conference Paper
Closed access
Diogo PessoaDiogo Pessoa
Diogo Pessoa
GPGeorgios Petmezas
Georgios Petmezas
VPVasileios Papageorgiou
Vasileios Papageorgiou
BRBruno Rocha
Bruno Rocha
LSLeandros Stefanopoulos
Leandros Stefanopoulos
Rui Pedro PaivaRui Pedro Paiva
Rui Pedro Paiva
Patients with respiratory conditions typically exhibit adventitious respiratory sounds (ARS), such as wheezes and crackles. In recent years, computerized methods for analyzing respiratory function, namely ARS, have gained increased attention within the scientific community. Such methods primarily aim to facilitate diagnosing and monitoring patients suffering from respiratory diseases. In this work, we propose a deep learning model for the automatic classification of respiratory sounds within the proposed tasks of the "IEEE BioCAS 2023 Grand Challenge on Respiratory Sound Classification". The model was based on a dual input convolutional deep learning architecture, using the raw audio signal and the short-time Fourier transform (STFT) spectrogram as inputs. Our model obtained a challenge total score of 0.590 (Task 1-1: 0.756; Task 1-2: 0.467; Task 2-1: 0.658; Task 2-2: 0.458).

23 February 2023 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Open access
BRBruno Rocha
Bruno Rocha
Diogo PessoaDiogo Pessoa
Diogo Pessoa
AMAlda Marques
Alda Marques
PCPaulo De Carvalho
Paulo De Carvalho
Rui Pedro PaivaRui Pedro Paiva
Rui Pedro Paiva
Wheezes are adventitious respiratory sounds commonly present in patients with respiratory conditions. The presence of wheezes and their time location are relevant for clinical reasons, such as understanding the degree of bronchial obstruction. Conventional auscultation is usually employed to analyze wheezes, but remote monitoring has become a pressing need during recent years. Automatic respiratory sound analysis is required to reliably perform remote auscultation. In this work we propose a method for wheeze segmentation. Our method starts by decomposing a given audio excerpt into intrinsic mode frequencies using empirical mode decomposition. Then, we apply harmonic-percussive source separation to the resulting audio tracks and get harmonic-enhanced spectrograms, which are processed to obtain harmonic masks. Subsequently, a series of empirically derived rules are applied to find wheeze candidates. Finally, the candidates stemming from the different audio tracks are merged and median filtered. In the evaluation stage, we compare our method to three baselines on the ICBHI 2017 Respiratory Sound Database, a challenging dataset containing various noise sources and background sounds. Using the full dataset, our method outperforms the baselines, achieving an F1 of 41.9%. Our method's performance is also better than the baselines across several stratified results focusing on five variables: recording equipment, age, sex, body-mass index, and diagnosis. We conclude that, contrary to what has been reported in the literature, wheeze segmentation has not been solved for real life scenario applications. Adaptation of existing systems to demographic characteristics might be a promising step in the direction of algorithm personalization, which would make automatic wheeze segmentation methods clinically viable.