Madina Shaimerdenova

Ms. Madina Shaimerdenova


Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 December 2018 in Sensors
Verified
Journal Article
Open access
PDF file
ABAliya Bekmurzayeva
Aliya Bekmurzayeva
KDKanat Dukenbayev
Kanat Dukenbayev
MSMadina Shaimerdenova
Madina Shaimerdenova
IBIldar Bekniyazov
Ildar Bekniyazov
TATakhmina Ayupova
Takhmina Ayupova
Daniele TosiDaniele Tosi
Daniele Tosi
A biosensor based on an etched Fiber Bragg Grating (EFBG) for thrombin detection is reported. The sensing system is based on a Fiber Bragg Grating (FBG) with a Bragg wavelength of 1550 nm, wet-etched in hydrofluoric acid (HF) for ~27 min, to achieve sensitivity to a refractive index (RI) of 17.4 nm/RIU (refractive index unit). Subsequently, in order to perform a selective detection of thrombin, the EFBG has been functionalized with silane-coupling agent 3-(aminopropyl)triethoxysilane (APTES) and a cross-linker, glutaraldehyde, for the immobilization of thrombin-binding aptamer. The biosensor has been validated for thrombin detection in concentrations ranging from 10 nM to 80 nM. The proposed sensor presents advantages with respect to other sensor configurations, based on plasmonic resonant tilted FBG or Long Period Grating (LPG), for thrombin detection. Firstly, fabricating an EFBG only requires chemical etching. Moreover, the functionalization method used in this study (silanization) allows the avoidance of complicated and expensive fabrications, such as thin film sputtering or chemical vapor deposition. Due to their characteristics, EFBG sensors are easier to multiplex and can be used in vivo. This opens new possibilities for the detection of thrombin in clinical settings.

1 July 2018 in International Journal of Biological Macromolecules
Verified
Journal Article
Closed access
Dana AkilbekovaDana Akilbekova
Dana Akilbekova
MSMadina Shaimerdenova
Madina Shaimerdenova
SASalimgerey Adilov
Salimgerey Adilov
Dmitriy BerilloDmitriy Berillo
Dmitriy Berillo

28 July 2022 in Biosensors
Verified
Journal Article
Open access
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Catia LeitaoCatia Leitao
Catia Leitao
SPSónia O. Pereira
Sónia O. Pereira
Carlos MarquesCarlos Marques
Carlos Marques
Nunzio CennamoNunzio Cennamo
Nunzio Cennamo
LZLuigi Zeni
Luigi Zeni
Daniele TosiDaniele Tosi
Daniele Tosi
In the last years, optical fiber sensors have proven to be a reliable and versatile biosensing tool. Optical fiber biosensors (OFBs) are analytical devices that use optical fibers as transducers, with the advantages of being easily coated and biofunctionalized, allowing the monitorization of all functionalization and detection in real-time, as well as being small in size and geometrically flexible, thus allowing device miniaturization and portability for point-of-care (POC) testing. Knowing the potential of such biosensing tools, this paper reviews the reported OFBs which are, at the moment, the most cost-effective. Different fiber configurations are highlighted, namely, end-face reflected, unclad, D- and U-shaped, tips, ball resonators, tapered, light-diffusing, and specialty fibers. Packaging techniques to enhance OFBs’ application in the medical field, namely for implementing in subcutaneous, percutaneous, and endoscopic operations as well as in wearable structures, are presented and discussed. Interrogation approaches of OFBs using smartphones’ hardware are a great way to obtain cost-effective sensing approaches. In this review paper, different architectures of such interrogation methods and their respective applications are presented. Finally, the application of OFBs in monitoring three crucial fields of human life and wellbeing are reported: detection of cancer biomarkers, detection of cardiovascular biomarkers, and environmental monitoring.

4 December 2018 in Optics Letters
Verified
Journal Article
Closed access
PDF file
MSMarzhan Sypabekova
Marzhan Sypabekova
SKSanzhar Korganbayev
Sanzhar Korganbayev
WBWilfried Blanc
Wilfried Blanc
TATakhmina Ayupova
Takhmina Ayupova
ABAliya Bekmurzayeva
Aliya Bekmurzayeva
Daniele TosiDaniele Tosi
Daniele Tosi
We demonstrate and experimentally validate a fiber optic refractive index (RI) sensor obtained by simply etching a high-scattering MgO-based nanoparticle-doped single-mode fiber in hydrofluoric acid (HF). The fiber has 32.3 dB stronger Rayleigh scattering than a standard fiber, allowing a detection of scattering spectral signatures with an optical backscatter reflectometer, even when the core is exposed to the outer RI. The obtained sensitivity is 1.53 nm/RIU (RI units), measured by correlating the scattering spectra. We prove the possibility of implementing a distributed RI detection (seven locations spaced by 1 mm). The fabrication method for this RI sensor is simplified, since it simply requires etching in an HF bath, without the need of inscribing reflective elements or fabricating microstructures in the fiber.

30 October 2020 in Sensors
Verified
Journal Article
Open access
PDF file
MSMadina Shaimerdenova
Madina Shaimerdenova
TATakhmina Ayupova
Takhmina Ayupova
MSMarzhan Sypabekova
Marzhan Sypabekova
Daniele TosiDaniele Tosi
Daniele Tosi
In this work, we introduced fabrication and interrogation of simple and highly sensitive fiber-optic refractive index (RI) sensors based on ball resonators built on the tip of single-mode fibers. The probes have been fabricated through a CO2 fiber splicer, with a fast (~600 s) and repeatable method. The ball resonator acted as a weak interferometer with a return loss below −50 dB and was interrogated with an optical backscatter reflectometer measuring the reflection spectrum. The ball resonators behaved as weak interferometers with a shallow fringe and a spectrum that appeared close to a random signal, and RI sensitivity could be measured either through wavelength shift or amplitude change. In this work, we reported four samples having sensitivity ranges 48.9–403.3 nm/RIU and 256.0–566.2 dB/RIU (RIU = refractive index unit). Ball resonators appeared as a sensitive and robust platform for RI sensing in liquid and can be further functionalized for biosensing.

23 March 2017 in Infectious Agents and Cancer
Verified
Journal Article
Open access
PDF file
MSMadina Shaimerdenova
Madina Shaimerdenova
OKOrynbassar Karapina
Orynbassar Karapina
DMDamel Mektepbayeva
Damel Mektepbayeva
KAKenneth Alibek
Kenneth Alibek
Dana AkilbekovaDana Akilbekova
Dana Akilbekova
Recent studies have revealed the positive antiproliferative and cytotoxic effects of antiviral agents in cancer treatment. The real effect of adjuvant antiviral therapy is still controversial due to the lack of studies in biochemical mechanisms. Here, we studied the effect of the antiviral agent acyclovir on morphometric and migratory features of the MCF7 breast cancer cell line. Molecular levels of various proteins have also been examined. To evaluate and assess the effect of antiviral treatment on morphometric, migratory and other cellular characteristics of MCF7 breast cancer cells, the following experiments were performed: (i) MTT assay to measure the viability of MCF7 cells; (ii) Colony formation ability by soft agar assay; (iii) Morphometric characterization by immunofluorescent analysis using confocal microscopy; (iv) wound healing and transwell membrane assays to evaluate migration and invasion capacity of the cells; (v) ELISA colorimetric assays to assess expression levels of caspase-3, E-cadherin and enzymatic activity of aldehyde dehydrogenase (ALDH). We demonstrate the suppressive effect of acyclovir on breast cancer cells. Acyclovir treatment decreases the growth and the proliferation rate of cells and correlates with the upregulated levels of apoptosis associated cytokine Caspase-3. Moreover, acyclovir inhibits colony formation ability and cell invasion capacity of the cancer cells while enhancing the expression of E-cadherin protein in MCF7 cells. Breast cancer cells are characterized by high ALDH activity and associated with upregulated proliferation and invasion. According to this study, acyclovir downregulates ALDH activity in MCF7 cells. These results are encouraging and demonstrate the possibility of partial suppression of cancer cell proliferation using an antiviral agent. Acyclovir antiviral agents have a great potential as an adjuvant therapy in the cancer treatment. However, more research is necessary to identify relevant biochemical mechanisms by which acyclovir induces a potent anti-cancer effect.